Detailed information of SNP:
|
SNP ID:
sf0629221124(Gbrowse)
Chromosome: chr06 Position: 29221124 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 83.23% | 16.77% |
| All Indica | 793 | 93.82% | 6.18% |
| All Japonica | 497 | 69.01% | 30.99% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 372 | 88.44% | 11.56% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 335 | 58.51% | 41.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629221124 | G->C | INTERGENIC | None |