Detailed information of SNP:
|
SNP ID:
sf0629344548(Gbrowse)
Chromosome: chr06 Position: 29344548 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.74% | 7.26% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629344548 | G->A | INTERGENIC | None |