Detailed information of SNP:
|
SNP ID:
sf0629373173(Gbrowse)
Chromosome: chr06 Position: 29373173 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 93.07% | 6.93% |
| All Indica | 761 | 88.30% | 11.70% |
| All Japonica | 493 | 99.59% | 0.41% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 350 | 82.00% | 18.00% |
| Indica II | 207 | 96.62% | 3.38% |
| Indica Intermediate | 204 | 90.69% | 9.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629373173 | T->A | INTERGENIC | None |