Detailed information of SNP:
|
SNP ID:
sf0629377362(Gbrowse)
Chromosome: chr06 Position: 29377362 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.27% | 40.73% |
| All Indica | 799 | 41.18% | 58.82% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 25.33% | 74.67% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629377362 | T->C | LOC_Os06g48550(LOC_Os06g48550.1) | INTRON |