Detailed information of SNP:
|
SNP ID:
sf0629449403(Gbrowse)
Chromosome: chr06 Position: 29449403 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 76.45% | 23.55% |
| All Indica | 791 | 61.82% | 38.18% |
| All Japonica | 496 | 95.56% | 4.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 51.48% | 48.52% |
| Indica II | 212 | 72.64% | 27.36% |
| Indica Intermediate | 208 | 69.23% | 30.77% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629449403 | T->C | INTERGENIC | None |