Detailed information of SNP:



SNP ID: sf0629449403(Gbrowse)

Chromosome: chr06

Position: 29449403
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1410 76.45% 23.55%
All Indica791 61.82% 38.18%
All Japonica496 95.56% 4.44%
Aus67 100.00% 0.00%
Indica I371 51.48% 48.52%
Indica II212 72.64% 27.36%
Indica Intermediate208 69.23% 30.77%
Temperate Japonica335 98.51% 1.49%
Tropical Japonica94 86.17% 13.83%
Japonica Intermediate67 94.03% 5.97%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0629449403 T->C INTERGENIC None