Detailed information of SNP:
|
SNP ID:
sf0629488805(Gbrowse)
Chromosome: chr06 Position: 29488805 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 60.64% | 39.36% |
| All Indica | 798 | 91.98% | 8.02% |
| All Japonica | 490 | 10.00% | 90.00% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 374 | 86.90% | 13.10% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 329 | 2.74% | 97.26% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629488805 | G->A | INTERGENIC | None |