Detailed information of SNP:
|
SNP ID:
sf0629495846(Gbrowse)
Chromosome: chr06 Position: 29495846 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1348 | 85.24% | 14.76% |
| All Indica | 732 | 74.59% | 25.41% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 336 | 66.96% | 33.04% |
| Indica II | 197 | 75.13% | 24.87% |
| Indica Intermediate | 199 | 86.93% | 13.07% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629495846 | C->T | INTERGENIC | None |