Detailed information of SNP:
|
SNP ID:
sf0629496333(Gbrowse)
Chromosome: chr06 Position: 29496333 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 56.80% | 43.20% |
| All Indica | 799 | 87.23% | 12.77% |
| All Japonica | 476 | 14.08% | 85.92% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 314 | 16.24% | 83.76% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629496333 | A->G | INTERGENIC | None |