Detailed information of SNP:
|
SNP ID:
sf0629504682(Gbrowse)
Chromosome: chr06 Position: 29504682 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 73.59% | 26.41% |
| All Indica | 797 | 64.37% | 35.63% |
| All Japonica | 496 | 91.94% | 8.06% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 212 | 65.09% | 34.91% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629504682 | A->G | LOC_Os06g48750(LOC_Os06g48750.1) | INTRON |
| sf0629504682 | A->G | LOC_Os06g48750(LOC_Os06g48750.3) | INTRON |
| sf0629504682 | A->G | LOC_Os06g48750(LOC_Os06g48750.2) | INTRON |