Detailed information of SNP:
|
SNP ID:
sf0629540636(Gbrowse)
Chromosome: chr06 Position: 29540636 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 81.80% | 18.20% |
| All Indica | 747 | 70.01% | 29.99% |
| All Japonica | 493 | 96.35% | 3.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 336 | 66.07% | 33.93% |
| Indica II | 205 | 67.80% | 32.20% |
| Indica Intermediate | 206 | 78.64% | 21.36% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 91 | 90.11% | 9.89% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629540636 | A->G | INTERGENIC | None |