Detailed information of SNP:
|
SNP ID:
sf0629541109(Gbrowse)
Chromosome: chr06 Position: 29541109 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 67.14% | 32.86% |
| All Indica | 798 | 90.85% | 9.15% |
| All Japonica | 497 | 23.74% | 76.26% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 23.28% | 76.72% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629541109 | A->G | INTERGENIC | None |