Detailed information of SNP:
|
SNP ID:
sf0629558150(Gbrowse)
Chromosome: chr06 Position: 29558150 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 94.76% | 5.24% |
| All Indica | 741 | 91.23% | 8.77% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 357 | 90.48% | 9.52% |
| Indica II | 196 | 92.86% | 7.14% |
| Indica Intermediate | 188 | 90.96% | 9.04% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629558150 | G->A | LOC_Os06g48839(LOC_Os06g48839.1) | INTRON |