Detailed information of SNP:



SNP ID: sf0629599576(Gbrowse)

Chromosome: chr06

Position: 29599576
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 91.33% 8.67%
All Indica799 90.24% 9.76%
All Japonica497 94.97% 5.03%
Aus67 92.54% 7.46%
Indica I375 89.07% 10.93%
Indica II213 99.06% 0.94%
Indica Intermediate211 83.41% 16.59%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 90.43% 9.57%
Japonica Intermediate68 77.94% 22.06%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0629599576 G->A INTERGENIC None