Detailed information of SNP:
|
SNP ID:
sf0629599576(Gbrowse)
Chromosome: chr06 Position: 29599576 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 91.33% | 8.67% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629599576 | G->A | INTERGENIC | None |