Detailed information of SNP:
|
SNP ID:
sf0629625078(Gbrowse)
Chromosome: chr06 Position: 29625078 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 61.78% | 38.22% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 82.62% | 17.38% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629625078 | T->C | INTERGENIC | None |