Detailed information of SNP:
|
SNP ID:
sf0629644508(Gbrowse)
Chromosome: chr06 Position: 29644508 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 64.41% | 35.59% |
| All Indica | 795 | 93.21% | 6.79% |
| All Japonica | 475 | 10.95% | 89.05% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 73 | 35.62% | 64.38% |
| Japonica Intermediate | 67 | 26.87% | 73.13% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629644508 | C->T | INTERGENIC | None |