Detailed information of SNP:
|
SNP ID:
sf0629713030(Gbrowse)
Chromosome: chr06 Position: 29713030 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 54.34% | 45.66% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629713030 | C->G | LOC_Os06g49030(LOC_Os06g49030.1) | INTRON |
| sf0629713030 | C->G | LOC_Os06g49030(LOC_Os06g49030.2) | INTRON |