Detailed information of SNP:
|
SNP ID:
sf0629766193(Gbrowse)
Chromosome: chr06 Position: 29766193 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 76.98% | 23.02% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 496 | 66.73% | 33.27% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629766193 | T->C | INTERGENIC | None |