Detailed information of SNP:
|
SNP ID:
sf0629850799(Gbrowse)
Chromosome: chr06 Position: 29850799 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1250 | 96.48% | 3.52% |
| All Indica | 757 | 97.36% | 2.64% |
| All Japonica | 416 | 96.88% | 3.12% |
| Aus | 29 | 79.31% | 20.69% |
| Indica I | 370 | 97.57% | 2.43% |
| Indica II | 180 | 96.67% | 3.33% |
| Indica Intermediate | 207 | 97.58% | 2.42% |
| Temperate Japonica | 326 | 99.39% | 0.61% |
| Tropical Japonica | 47 | 85.11% | 14.89% |
| Japonica Intermediate | 43 | 90.70% | 9.30% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629850799 | T->C | LOC_Os06g49260(LOC_Os06g49260.1) | INTRON |