Detailed information of SNP:
|
SNP ID:
sf0629853148(Gbrowse)
Chromosome: chr06 Position: 29853148 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1244 | 98.39% | 1.61% |
| All Indica | 631 | 96.83% | 3.17% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 278 | 94.60% | 5.40% |
| Indica II | 179 | 98.88% | 1.12% |
| Indica Intermediate | 174 | 98.28% | 1.72% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629853148 | C->G | LOC_Os06g49260(LOC_Os06g49260.1) | INTRON |