Detailed information of SNP:
|
SNP ID:
sf0630023753(Gbrowse)
Chromosome: chr06 Position: 30023753 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1229 | 52.81% | 47.19% |
| All Indica | 636 | 90.09% | 9.91% |
| All Japonica | 488 | 2.66% | 97.34% |
| Aus | 56 | 80.36% | 19.64% |
| Indica I | 289 | 87.20% | 12.80% |
| Indica II | 179 | 96.65% | 3.35% |
| Indica Intermediate | 168 | 88.10% | 11.90% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 90 | 6.67% | 93.33% |
| Japonica Intermediate | 65 | 4.62% | 95.38% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 35 | 51.43% | 48.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630023753 | A->G | INTERGENIC | None |