Detailed information of SNP:
|
SNP ID:
sf0630042982(Gbrowse)
Chromosome: chr06 Position: 30042982 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 75.73% | 24.27% |
| All Indica | 790 | 98.35% | 1.65% |
| All Japonica | 497 | 34.61% | 65.39% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 370 | 99.19% | 0.81% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630042982 | A->G | INTERGENIC | None |