Detailed information of SNP:
|
SNP ID:
sf0630076330(Gbrowse)
Chromosome: chr06 Position: 30076330 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 92.74% | 7.26% |
| All Indica | 788 | 87.94% | 12.06% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 370 | 90.00% | 10.00% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 207 | 74.40% | 25.60% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630076330 | A->C | INTERGENIC | None |