Detailed information of SNP:
|
SNP ID:
sf0630077361(Gbrowse)
Chromosome: chr06 Position: 30077361 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 93.42% | 6.58% |
| All Indica | 781 | 89.63% | 10.37% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 366 | 91.80% | 8.20% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 206 | 77.67% | 22.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630077361 | G->A | INTERGENIC | None |