Detailed information of SNP:
|
SNP ID:
sf0630107580(Gbrowse)
Chromosome: chr06 Position: 30107580 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 81.25% | 18.75% |
| All Indica | 799 | 87.86% | 12.14% |
| All Japonica | 497 | 81.09% | 18.91% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630107580 | A->G | INTERGENIC | None |