Detailed information of SNP:
|
SNP ID:
sf0630116416(Gbrowse)
Chromosome: chr06 Position: 30116416 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1264 | 87.34% | 12.66% |
| All Indica | 657 | 77.47% | 22.53% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 62 | 91.94% | 8.06% |
| Indica I | 305 | 77.70% | 22.30% |
| Indica II | 171 | 80.70% | 19.30% |
| Indica Intermediate | 181 | 74.03% | 25.97% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630116416 | C->T | INTERGENIC | None |