Detailed information of SNP:
|
SNP ID:
sf0630267419(Gbrowse)
Chromosome: chr06 Position: 30267419 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.28% | 36.72% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 497 | 16.90% | 83.10% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630267419 | A->T | INTERGENIC | None |