Detailed information of SNP:
|
SNP ID:
sf0630305973(Gbrowse)
Chromosome: chr06 Position: 30305973 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1310 | 94.50% | 5.50% |
| All Indica | 701 | 89.87% | 10.13% |
| All Japonica | 491 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 331 | 85.50% | 14.50% |
| Indica II | 174 | 98.28% | 1.72% |
| Indica Intermediate | 196 | 89.80% | 10.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630305973 | G->T | LOC_Os06g50030(LOC_Os06g50030.1) | Synonymous |