Detailed information of SNP:
|
SNP ID:
sf0630337359(Gbrowse)
Chromosome: chr06 Position: 30337359 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.49% | 32.51% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 497 | 13.48% | 86.52% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630337359 | T->C | LOC_Os06g50070(LOC_Os06g50070.1) | UTR_3_PRIME |