Detailed information of SNP:
|
SNP ID:
sf0630358506(Gbrowse)
Chromosome: chr06 Position: 30358506 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 85.13% | 14.87% |
| All Indica | 799 | 86.98% | 13.02% |
| All Japonica | 497 | 82.09% | 17.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 73.87% | 26.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630358506 | T->C | LOC_Os06g50120(LOC_Os06g50120.1) | Synonymous |
| sf0630358506 | T->C | LOC_Os06g50120(LOC_Os06g50120.2) | Synonymous |