Detailed information of SNP:
|
SNP ID:
sf0630440708(Gbrowse)
Chromosome: chr06 Position: 30440708 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 59.33% | 40.67% |
| All Indica | 786 | 39.19% | 60.81% |
| All Japonica | 492 | 87.20% | 12.80% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 48.66% | 51.34% |
| Indica II | 207 | 23.67% | 76.33% |
| Indica Intermediate | 207 | 37.68% | 62.32% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 51.09% | 48.91% |
| Japonica Intermediate | 65 | 76.92% | 23.08% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630440708 | A->G | LOC_Os06g50290(LOC_Os06g50290.1) | INTRON |