Detailed information of SNP:
|
SNP ID:
sf0630441373(Gbrowse)
Chromosome: chr06 Position: 30441373 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 57.12% | 42.88% |
| All Indica | 779 | 35.94% | 64.06% |
| All Japonica | 491 | 86.35% | 13.65% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 368 | 46.74% | 53.26% |
| Indica II | 207 | 18.84% | 81.16% |
| Indica Intermediate | 204 | 33.82% | 66.18% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 90 | 48.89% | 51.11% |
| Japonica Intermediate | 66 | 74.24% | 25.76% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630441373 | G->A | LOC_Os06g50290(LOC_Os06g50290.1) | Synonymous |