Detailed information of SNP:
|
SNP ID:
sf0630441917(Gbrowse)
Chromosome: chr06 Position: 30441917 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 55.84% | 44.16% |
| All Indica | 780 | 36.67% | 63.33% |
| All Japonica | 492 | 81.91% | 18.09% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 366 | 48.36% | 51.64% |
| Indica II | 209 | 18.66% | 81.34% |
| Indica Intermediate | 205 | 34.15% | 65.85% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 90 | 30.00% | 70.00% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630441917 | C->T | LOC_Os06g50290(LOC_Os06g50290.1) | Non-Synonymous SNP |