Detailed information of SNP:
|
SNP ID:
sf0630442305(Gbrowse)
Chromosome: chr06 Position: 30442305 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 54.98% | 45.02% |
| All Indica | 779 | 35.30% | 64.70% |
| All Japonica | 496 | 81.85% | 18.15% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 361 | 47.92% | 52.08% |
| Indica II | 209 | 18.18% | 81.82% |
| Indica Intermediate | 209 | 30.62% | 69.38% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630442305 | A->G | INTERGENIC | None |