Detailed information of SNP:
|
SNP ID:
sf0630463176(Gbrowse)
Chromosome: chr06 Position: 30463176 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 67.12% | 32.88% |
| All Indica | 798 | 92.98% | 7.02% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 44 | 68.18% | 31.82% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630463176 | A->G | INTERGENIC | None |