Detailed information of SNP:
|
SNP ID:
sf0630507779(Gbrowse)
Chromosome: chr06 Position: 30507779 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 76.73% | 23.27% |
| All Indica | 794 | 64.23% | 35.77% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 65.42% | 34.58% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 208 | 52.88% | 47.12% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630507779 | T->C | INTERGENIC | None |