Detailed information of SNP:
|
SNP ID:
sf0630509504(Gbrowse)
Chromosome: chr06 Position: 30509504 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 55.27% | 44.73% |
| All Indica | 796 | 36.43% | 63.57% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 35.73% | 64.27% |
| Indica II | 212 | 26.42% | 73.58% |
| Indica Intermediate | 209 | 47.85% | 52.15% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630509504 | A->T | LOC_Os06g50390(LOC_Os06g50390.1) | INTRON |