Detailed information of SNP:
|
SNP ID:
sf0630514808(Gbrowse)
Chromosome: chr06 Position: 30514808 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1345 | 91.97% | 8.03% |
| All Indica | 730 | 86.03% | 13.97% |
| All Japonica | 493 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 328 | 83.54% | 16.46% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 192 | 82.29% | 17.71% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630514808 | A->G | INTERGENIC | None |