Detailed information of SNP:
|
SNP ID:
sf0630584469(Gbrowse)
Chromosome: chr06 Position: 30584469 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 93.14% | 6.86% |
| All Indica | 786 | 93.64% | 6.36% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 33.33% | 66.67% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 206 | 89.81% | 10.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630584469 | C->T | INTERGENIC | None |