Detailed information of SNP:
|
SNP ID:
sf0630585444(Gbrowse)
Chromosome: chr06 Position: 30585444 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 74.34% | 25.66% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 31.59% | 68.41% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 20.00% | 80.00% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 10 | 50.00% | 50.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630585444 | T->C | INTERGENIC | None |