Detailed information of SNP:
|
SNP ID:
sf0630591259(Gbrowse)
Chromosome: chr06 Position: 30591259 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 95.26% | 4.74% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 492 | 86.99% | 13.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 95.78% | 4.22% |
| Tropical Japonica | 92 | 68.48% | 31.52% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630591259 | C->T | LOC_Os06g50520(LOC_Os06g50520.1) | UTR_3_PRIME |
| sf0630591259 | C->T | LOC_Os06g50520(LOC_Os06g50520.2) | UTR_3_PRIME |