Detailed information of SNP:
|
SNP ID:
sf0630626916(Gbrowse)
Chromosome: chr06 Position: 30626916 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1290 | 72.40% | 27.60% |
| All Indica | 675 | 52.59% | 47.41% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 304 | 37.83% | 62.17% |
| Indica II | 198 | 73.74% | 26.26% |
| Indica Intermediate | 173 | 54.34% | 45.66% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630626916 | G->C | INTERGENIC | None |