Detailed information of SNP:
|
SNP ID:
sf0630657315(Gbrowse)
Chromosome: chr06 Position: 30657315 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 73.66% | 26.34% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 479 | 24.84% | 75.16% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 328 | 4.88% | 95.12% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 60 | 33.33% | 66.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630657315 | T->C | INTERGENIC | None |