Detailed information of SNP:



SNP ID: sf0630785992(Gbrowse)

Chromosome: chr06

Position: 30785992
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1415 54.63% 45.37%
All Indica796 40.33% 59.67%
All Japonica496 81.85% 18.15%
Aus67 40.30% 59.70%
Indica I374 39.57% 60.43%
Indica II213 28.17% 71.83%
Indica Intermediate209 54.07% 45.93%
Temperate Japonica335 90.15% 9.85%
Tropical Japonica93 67.74% 32.26%
Japonica Intermediate68 60.29% 39.71%
Group VI/Aromatic14 28.57% 71.43%
Intermediate42 35.71% 64.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0630785992 T->C INTERGENIC None