Detailed information of SNP:
SNP ID:
sf0630785992(Gbrowse)
Chromosome: chr06 Position: 30785992 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1415 | 54.63% | 45.37% |
All Indica | 796 | 40.33% | 59.67% |
All Japonica | 496 | 81.85% | 18.15% |
Aus | 67 | 40.30% | 59.70% |
Indica I | 374 | 39.57% | 60.43% |
Indica II | 213 | 28.17% | 71.83% |
Indica Intermediate | 209 | 54.07% | 45.93% |
Temperate Japonica | 335 | 90.15% | 9.85% |
Tropical Japonica | 93 | 67.74% | 32.26% |
Japonica Intermediate | 68 | 60.29% | 39.71% |
Group VI/Aromatic | 14 | 28.57% | 71.43% |
Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0630785992 | T->C | INTERGENIC | None |