Detailed information of SNP:
|
SNP ID:
sf0630792827(Gbrowse)
Chromosome: chr06 Position: 30792827 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1266 | 96.45% | 3.55% |
| All Indica | 757 | 99.87% | 0.13% |
| All Japonica | 391 | 89.00% | 11.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 182 | 99.45% | 0.55% |
| Indica Intermediate | 203 | 100.00% | 0.00% |
| Temperate Japonica | 271 | 84.87% | 15.13% |
| Tropical Japonica | 58 | 96.55% | 3.45% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630792827 | A->G | INTERGENIC | None |