Detailed information of SNP:
|
SNP ID:
sf0630797686(Gbrowse)
Chromosome: chr06 Position: 30797686 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.60% | 28.40% |
| All Indica | 799 | 66.71% | 33.29% |
| All Japonica | 497 | 82.49% | 17.51% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 64.00% | 36.00% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630797686 | C->T | LOC_Os06g50910(LOC_Os06g50910.1) | INTRON |