Detailed information of SNP:
|
SNP ID:
sf0630808494(Gbrowse)
Chromosome: chr06 Position: 30808494 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.12% | 44.88% |
| All Indica | 797 | 86.07% | 13.93% |
| All Japonica | 497 | 9.26% | 90.74% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 211 | 65.40% | 34.60% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630808494 | G->A | LOC_Os06g50910(LOC_Os06g50910.1) | Non-Synonymous SNP |
| sf0630808494 | G->A | LOC_Os06g50910(LOC_Os06g50910.3) | Non-Synonymous SNP |
| sf0630808494 | G->A | LOC_Os06g50910(LOC_Os06g50910.2) | Non-Synonymous SNP |