Detailed information of SNP:
|
SNP ID:
sf0630840545(Gbrowse)
Chromosome: chr06 Position: 30840545 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 90.84% | 9.16% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630840545 | A->G | INTERGENIC | None |