Detailed information of SNP:
SNP ID:
sf0630846924(Gbrowse)
Chromosome: chr06 Position: 30846924 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1415 | 71.17% | 28.83% |
All Indica | 798 | 100.00% | 0.00% |
All Japonica | 496 | 18.55% | 81.45% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 210 | 100.00% | 0.00% |
Temperate Japonica | 335 | 3.58% | 96.42% |
Tropical Japonica | 93 | 68.82% | 31.18% |
Japonica Intermediate | 68 | 23.53% | 76.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0630846924 | T->A | LOC_Os06g50960(LOC_Os06g50960.1) | UTR_3_PRIME |