Detailed information of SNP:



SNP ID: sf0630846924(Gbrowse)

Chromosome: chr06

Position: 30846924
Major allele: A

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1415 71.17% 28.83%
All Indica798 100.00% 0.00%
All Japonica496 18.55% 81.45%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate210 100.00% 0.00%
Temperate Japonica335 3.58% 96.42%
Tropical Japonica93 68.82% 31.18%
Japonica Intermediate68 23.53% 76.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 90.00% 10.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0630846924 T->A LOC_Os06g50960(LOC_Os06g50960.1) UTR_3_PRIME