Detailed information of SNP:



SNP ID: sf0630849634(Gbrowse)

Chromosome: chr06

Position: 30849634
Major allele: A

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1417 71.07% 28.93%
All Indica798 100.00% 0.00%
All Japonica497 18.51% 81.49%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate210 100.00% 0.00%
Temperate Japonica335 3.58% 96.42%
Tropical Japonica94 68.09% 31.91%
Japonica Intermediate68 23.53% 76.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 87.80% 12.20%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0630849634 T->A INTERGENIC None