Detailed information of SNP:
|
SNP ID:
sf0630855306(Gbrowse)
Chromosome: chr06 Position: 30855306 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 72.85% | 27.15% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 497 | 40.24% | 59.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 27.76% | 72.24% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630855306 | A->G | INTERGENIC | None |